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文献鸟Stork是我的科研好帮手

December 17th, 2015

我在Baylor College of Medicine读研究生的时候经常遇到一种尴尬局面,就是同学们在热烈讨论本领域某篇文献的时候,我一脸茫然 — 因为我压根就不知道这篇文章。回头PubMed查查,这篇文章其实已经发表有一年了。

更绝的一个例子是,有次我老板发了文章我都不知道。当然,实验室大,有许多项目,我没有涉及那个项目。不过还是有点说不过去。

若干年后,我们开发的PaperBox的眼睛功能,现在改名为文献鸟Stork,才彻底解决了我这个问题。文献鸟用起来蛮简单的,我把能想到的所有我想跟踪的关键词和人名都输进去,然后我什么都不需要管了。文献鸟Stork会每天帮我自动搜索,把结果发送给我。现在我都是实验室第一个知道“大牛David Boas发新文章了”或者“又有人用nirs做超扫描了”等等。有面子,还长自信 :)

我有50余个关键词,文献鸟Stork会不会给我一天发50封邮件呢?不会。文献鸟Stork不会滥用你的邮箱;她会把每天的结果总结一下,最多只发一封信。

另外她还很聪明。因为有时结果多,我需要快速知道那篇文章更值得一看,文献鸟Stork就会把每篇文章对应的期刊的影响因子用颜色标记出来。颜色越黄,说明期刊越好。我在时间紧张的时候就可以只看顶尖期刊的文章了。

Stork还支持从简单到复杂的关键词。如果我想了解某个领域,比如fMRI领域,那么我就可以用一个简单的关键词fMRI即可。如果我想了解用fMRI这种方法研究情绪的文献,则我的关键词就是fMRI emotion。默认情况下,不同单词之间的关系相当于逻辑符AND,因此只要文章中同时出现了fMRI和emotion(不管顺序,也不管两个词之间有没有其它词),就会被推送。但是,如果我只想要fMRI emotion连在一起的文章,这时候加个双引号就可以了:”fMRI emotion”。

当然,更加复杂的逻辑符Stork也是支持的。比如(Nature[Journal]) AND (fMRI OR EEG) AND emotion NOT facial, 这个关键词就说明我对发表在Nature杂志上、用fMRI或者EEG(两种方法都可以)、研究情绪、但是又不包含facial这样的文献。是不是很强大?

如果对某个研究人员的文献感兴趣,可以直接用他的全名作为关键词。比如David Boas。不要加引号。当然,有的名字实在是太普通了,会有许多重名的,这时候加上他所在的单位或者城市名即可。比如David Boas, Harvard University。如果这个人可能在两个地方都工作,可以用OR,比如(Fumiko Hoeft) AND ((university of california) OR stanford)。

如果不用全名而只用简写名,就要用下面格式,姓、空格、简写。比如Reiss AL。  不要加引号,中间也不要加逗号之类的。

请大家赶快用文献鸟Stork吧,相信你会眼睛一亮的!

附录:

下面是文献鸟Stork给我发的一封信样例:

Stork Sample Email

Stork Sample Email

下面是我自己的一些关键词,做近红外或fMRI的同学们可以借鉴呢!

  1. (fumiko hoeft) AND ((university of california) OR stanford)   
  2. (jian li) AND ((phelps) OR montague OR (Peking University psychology))   
  3. baldwin Philip   
  4. brooks king-casas   
  5. cell[ta] fmri   
  6. chao liu, beijing normal university   
  7. chess stetson   
  8. David Boas   
  9. David Hong stanford   
  10. dongni yang baylor   
  11. eagleman dm [au] baylor   
  12. fmri deception   
  13. fmri resting state parent child   
  14. hanli liu, university of texas   
  15. Hosseini, S M Hadi   
  16. hyperscanning   
  17. iphone   
  18. Jack Gallant   
  19. Kendrick Kay   
  20. koniku   
  21. lumosity   
  22. montague pr [au] baylor   
  23. montague pr[au] Virginia Tech   
  24. MyConnectome   
  25. nature[ta] fmri   
  26. ning gao, tsinghua   
  27. nirs brain   
  28. nirs deception   
  29. nu zhang, washington   
  30. pearl chiu   
  31. reiss al [au] stanford   
  32. rory sayres   
  33. Russell Poldrack, stanford   
  34. saggar manish   
  35. science[ta] fmri   
  36. signe bray   
  37. smart phone brain   
  38. social nirs   
  39. stanford kesler shelli   
  40. ting ni   
  41. xianchun li, “East China Normal University”   
  42. xiaolin zhou[au] peking   
  43. xu cui AND (stanford OR baylor OR Texas)   
  44. xu q[au] harvard   
  45. yan song[au] stanford   
  46. yangming wang, peking   
  47. yufeng shen [au]   
  48. yulong li (stanford or Peking)   
  49. zen meditation   
  50. zhu chao-zhe beijing   
Author: Xu Cui Categories: brain, life, paperbox, programming, web Tags:

Recommending a free reference manager, PaperBox

October 4th, 2012

Reference managing is pretty annoying. But you can’t do research without reading papers, and can’t write manuscript without citing papers. Here I recommend a program which will effectively solve this problem.

PaperBox (http://www.paper-box.co/) is like EndNote, but with the following features:

  1. Access my library from any computer. For example, I have a Mac at lab, a PC at home, I also have an iPad and android smartphone.  I found an interesting paper at lab and added to my library and when I return home and log in PaperBox I can find that paper.
  2. Easy collaboration. I am managing a project on studying the social effect on human brain. Quite a few people are in this project, including 3 students and 2 postdocs. We need to constantly share papers and do journal clubs. We used to use email attachments; but it’s painful. Now with paperbox, I simply create a tag called “cog_social” and shared it with my colleagues. Whenever I add papers into this tag, they instantly get notified and see the paper. They can also add new papers to the tag. On top of it, we can cite the papers we collected together in Word - previously we have to email our endnote library back and forth.
  3. Realtime reference hinting. I found I need a “writing mood” to write papers. But my writing mood was always interrupted when I had to switch between Word and Endnote, and switch between keyboard and mouse. Now with the “realtime reference hinting” feature, I can cite in MS Word without breaking my flow. I simply type {{ and all my papers are listed. If I want to cite a paper authored by “David”, then I simply type {{david and only David’s papers are listed. Then I hit return and insert the citation. After the paper is done, I select a journal (e.g. Nature) and the citation is formatted accordingly.
  4. Import from EndNote. I have 60 papers in my EndNote library. First I saved my EndNote library as xml format, then imported that xml file in Peaya Paper. All my papers (and PDFs) are imported.

Other features include new paper alert, tagging, and discussion, etc. I’m sure your productivity will be improved a lot.

Where to download: http://www.paper-box.co/

Disclosure: I am the founder of PaperBox.

Author: Xu Cui Categories: paperbox, peaya, programming, technology Tags: