Retinotopy analysis with MrVista

This protocol is based on Rory Sayres‘ teaching. Download and install MrVista svn checkout If you already downloaded an older version, use svn update
Xu Cui
5 min read

recon-all of freesurfer

recon-all is a batch program and runs >30 steps.  It easily takes 30 hours to finish one subject. Use tkmedit CON14 T1.mgz and tksurfer CON14 lh inflated to visualize images. More about visualization with freesurfer. Note: commands are in green. T
Xu Cui
10 min read

retinotopy with freesurfer

Retinotopy analysis consists two parts, one on high resolution structural images (segmentation, inflation, cut, etc), the other on functional images. structural Before you start, you need to put the structural i
Xu Cui
2 min read