Converting DICOM files to Analyze file in batch mode

23 sec read

I use SPM’s dicom import function to convert DICOM files to Analyze files. But it’s quite inconvenient if I have 20 subjects. Below is a script to do this conversion automatically. You can call this function inside a loop.

function dicom2img(files)
% function dicom2img(files)
%
% This function is to convert dicom files to Analyze image files using SPM
% script
%
% files (optional): list of dicom files
%
% Xu Cui
%

if(nargin < 1)
    if findstr('SPM2',spm('ver'))
        files = spm_get('files', pwd, '*.dcm');
    else
        files = spm_select('list', pwd, '\.dcm');
    end
end

spm_defaults; 
hdr = spm_dicom_headers(files);
spm_dicom_convert(hdr);
display('done!')
return;



写作助手,把中式英语变成专业英文


Want to receive new post notification? 有新文章通知我

第四十七期fNIRS Journal Club通知2023/12/02, 10am 卢宏亮

协作是合作最基本、最底层的行为方式。从自然界中的狼群配合提高狩猎几率,再到人类社会中作战单元协作完成军事任务,协作都发挥着关键作用。然而,目前大部分协作研究依然停留在行为或脑活动观察水平,并未对两者因
Xu Cui
10 sec read

第四十六期fNIRS Journal Club视频 张腾飞

Youtube: https://www.youtube.com/watch?v=L4qc5gCttpc&feature=youtu.be Youku: https://v.youku.com
Xu Cui
14 sec read

第四十六期fNIRS Journal Club通知2023/10/28, 10am 张腾飞

在语言交流的过程中,预测起到了极为关键的作用。以往研究多在单脑情景下对语言预测加工进行检验,但在自然交流过程中,人际之间的预测如何发生呢?北京师范大学认知神经科学与学习国家重点实验室卢春明教授课题组的
Xu Cui
7 sec read

8 Replies to “Converting DICOM files to Analyze file in batch mode”

  1. Thanks for the code.I am using SPM5 and it does not have the function name spm_get.But I have replaced the function spm_get with spm_get_data.I have also passed the value of variable ‘files’.But still I am not getting the result.To access the files I have used following code:

    owd=input(‘Enter the path of RAW images:\n’);
    dirdata=dir(owd);
    dirIndex=[dirdata.isdir];
    files={dirdata(~dirIndex).name}’

    Kindly provide me the code and help
    Thanks

  2. The program runs and gives me error “Cant yet convert Phillips Intera DICOM”..This error is generated from spm_dicom_convert.m file.I do not understand why I am getting this message and how to remove it.

  3. The above code worked with some changes.Now in my code i need to direct the analysis files to another directory.I need it to be done inside the code.Please help me with it.
    Thanks

  4. Dear Xu!

    I am using spm8 and trying to batch the dicom import.
    Do you know how I can search also the subdirectories of the DICOM folder?

    So far,I cd to the DICOM folder and use
    [files,dirs]=cfg_getfile(‘list’, pwd, ‘.’);
    and get the subdirectories only.

    Thank you! Dorothea

Leave a Reply

Your email address will not be published. Required fields are marked *