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Functional Near Infrared Spectroscopy (fNIRS): List of manufactures

Contents Company Products Artinis Brite, OxyMon, OctaMon, PortaMon, PortaLite BIOPAC fNIR 100, fNIR2000M Series CORTIVISION PHOTONCAP Huichuang Medical NirScan-900X, NirSmartⅡ- Pro GOWERLABS NTS fNIRS

Xiaodan Feng
Apr 21, 2020 15 min read

What does a wavelet coherence plot tell you?

Can you find any pattern in the two signals, green and blue? The blue signal is the brain wave (measured by NIRS) of a person when he is pressing some buttons (the timing of button pressing is shown i

Xu Cui
Aug 27, 2012 1 min read

Wavelet Coherence

Wavelet transform coherence (WTC) is a method for analyzing the coherence and phase lag between two time series as a function of both time and frequency (Chang and Glover 2010). Here I played with it

Xu Cui
Aug 31, 2010 1 min read

SVM regression with libsvm

SVM is mostly commonly used for binary classifications. But one branch of SVM, SVM regression or SVR, is able to fit a continuous function to data. This is particularly useful when the predicted varia

Xu Cui
May 20, 2010 1 min read

浅谈近红外脑成像英文期刊文章撰写

本文作者是刘宁博士作者简介：刘宁，塔夫斯大学生物医学工程博士（Tufts University），斯坦福大学脑科学方向科研人员。 Frontiers 杂志客座编辑（Guest Associate Editor for Fronti

Xu Cui
Jun 23, 2022 11 sec read

nirs2img, create an image file from NIRS data

Update 2021/2/27: If you find griddata3 not working, try to change griddata3 to griddata. I was asked where to get nirs2img script. Here it is. The download link is at the bottom of this article. nirs2img is to create an image file from the input data. Then theimage file can be viewed by a

Xu Cui
Oct 2, 2019 51 sec read

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What is the probability that the sun will rise…

Laplace introduced the sunrise problem in 18th century. With prior knowledge that the sun has risen N days in the past consecutively (not knowing the gravity rules etc), what is your confidence that the sun will rise tomorrow? Let p be the probabilit

Xu Cui
May 6, 2011 1 min read

Handy programs to visualize NIRS data (5): plot2

Let’s say you have two correlated variables, x and y. You may have more then one data points with x=10 and y=5. But if you do a scatter plot all these data points of the same value will become a single dot. You may want to use circles with size

Xu Cui
Apr 27, 2011 31 sec read

Handy programs to visualize NIRS data (4): wt

In case you need to visualize your time series in both time and frequency domain (or just frequency domain), you can use the wt (wavelet transform) function in the Cross Wavelet and Wavelet Coherence toolbox by Grinsted et al. I often find the color

Xu Cui
Apr 26, 2011 33 sec read

Handy programs to visualize NIRS data (3): plotFFT

Sometimes you wish to know the spectrum of a time series. plotFFT is a handy function for this purpose. You instantly know the power of the signal at each frequency. Here is an example on how to use this function: figure; plotFFT(randn(1,1000)); Sour

Xu Cui
Apr 22, 2011 11 sec read

Handy programs to visualize NIRS data (2): plotTopoMap

Often you need to view the spatial pattern of activation as in the example below. plotTopoMap allows you to do that. It probably only works for Hitachi devices where the spatial relationship between channels are known. In the above example, the activ

Xu Cui
Apr 22, 2011 37 sec read

Handy programs to visualize NIRS data (1): plotTraces

You often need to plot the time series of NIRS signal from all channels with event indicators (See the example below). plotTraces can do that easily. In the above example, time series of all 24 channels are plotted. The number on the y-axis indicates

Xu Cui
Apr 20, 2011 26 sec read

MatLab set environment path

Quite often you need to call external or system commands inside MatLab. If those external commands are not in path, you need to add them. Here is how: setenv('PATH', );

Xu Cui
Apr 19, 2011 7 sec read

Converting DICOM files to Analyze file in batch mode

I use SPM’s dicom import function to convert DICOM files to Analyze files. But it’s quite inconvenient if I have 20 subjects. Below is a script to do this conversion automatically. You can call this function inside a loop. function dicom2

Xu Cui
Apr 19, 2011 23 sec read

PKU Bio-Net Reunion 2011

The 3rd PKU Bio-Net Annual Conference will be held on July 16th 2011, at Columbia University, New York City. This is a reunion for alumni of PKU School of Life Sciences (former Department of Biology) and other PKU alumni working in life science-relat

Xu Cui
Apr 15, 2011 10 sec read

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